Welcome to So3D

So3D: an comprehensive three-dimensional spatial omics resource to construct the three-dimensional (3D) tissue architecture in physiology and disease and dissect the biological processes occurring in 3D space from multiple perspectives.


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SpatialAtlas

Domain3D

Users can explore the distribution of the spatial domain in 3D space and the corresponding marker genes.

CellType3D

Users can explore cell-type spatial distribution in 3D space and matched scRNA-seq data.

SpatialDEG3D

Users can explore gene expression patterns across 3D spatial domain as well as the enriched spatial domains and celltypes.

Function3D

Users can explore the potential functions for the celltypes.

Communication3D

Users can explore the interactions among these celltypes in 3D space.

Visits/ Contact Us/ Our Works

Visitors

Contact us

    For questions, problems, comments on the database, please send a mail to wangli@hrbmu.edu.cn

About So3D

    We are teams of biophysics from College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.